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Summary

Job received at 2011-04-04 16:16:20
Job finished at 2011-04-04 16:29:52
Uploaded file name testset.bed.gz
Reference Annotation Human (hg18)
# of uploaded mapping loci 582,333
Total # of reads 1,367,246
Total # of tags 203,811

Click here to bookmark this page for reference. This result will be available online at least 2 weeks from your jobs finish time.

You will find all downloadable files at the end of this page.


Quality Control

The following figures indicate whether problems might have occured during sample or library preparation.

Read Length Distribution Multiple Mappings Distribution
Read fractions mapping into genes Read fractions mapping into ncRNAs

Analysis

This table summarizes the quantification of of the different ncRNA classes. Click on "View List" for detailed information for individual ncRNA species.

ncRNA Class Reads Reads (normalized) # of Genes Table
miRNA 1,141,865 816,175.5 661 View List
snoRNA_CD 50,991 29,031.09 181 View List
snoRNA_HACA 2,125 2,019.533 85 View List
tRNA 433,796 72,332.05 537 View List
scRNA 286,672 17,815.27 900 View List
snRNA 294,027 52,661.4 712 View List
rRNA 92,582 24,588.18 389 View List
snoRNA_scaRna 16,770 16,752.33 19 View List
misc_RNA 105 95.00559 8 View List

Predictions

ncRNAs patterns were identified using blockbuster . Random forest classification was performed using WEKA software. The used machine learning approach is published and can be looked up here.

General classifcation statistics:

miRNA snoRNA_HACA snoRNA_CD tRNA
miRNA 192 0 16 9
snoRNA_HACA 1 0 2 1
snoRNA_CD 16 1 36 36
tRNA 8 1 13 340
Confusion Matrix

These new putative ncRNAs were predicted within your data.

ncRNA Class # of Genes Table
miRNA 17 View List
snoRNA_CD 27 View List
tRNA 144 View List

User Annotation

You have provided additional annotation (ncRNAs.bed). The following table shows expression of those.

Class Identifier # of Genes Table
snoRNA_CD 181 View List
rRNA 389 View List
snRNA 712 View List
tRNA 537 View List
scRNA 900 View List
snoRNA_HACA 85 View List
miRNA 661 View List
snoRNA_scaRna 19 View List
misc_RNA 8 View List

Download

The following results are available in BED-file format:

Alternatively, you can download this zip-archive containing all result tables and images.